Overview of IMP
1
IMP中文版教程
1.1
首页信息
1.2
基于功能描述、注释或基因名字的全局搜索
1.3
以单基因为中心的详情页面展示
1.4
多基因表达图谱
1.5
Gene fishing 调取表达模式相近的基因
1.6
GO/KEGG 富集分析
1.7
GSEA 富集分析
1.8
BLAST序列比对和搜索
1.8.1
BLAST 参数参考
1.9
引物设计
1.10
多序列比对展示
1.11
序列提取
1.12
基因簇可视化
1.13
在线实验设计和差异基因分析
1.13.1
第一步：实验设计确定要比较的物种和分组信息（不同组织部位差异或不同处理的差异）
1.13.2
第二步：样品相关性评估和过滤异常样品
1.13.3
第三部，设置比较组
1.13.4
第四步：设置差异基因过滤阈值
1.13.5
第五步：概览样品信息和设置的参数，这一步是提交前的信息确认
1.13.6
第六步：差异基因分析结果报告
1.14
IGV 基因组浏览器
2
Systematic prediction and annotation of included genomes
2.1
Species with multiple genome assembles
2.2
Species without published genome assembles
3
Global search genes by IDs, functions, and pathways
3.1
Gene detail page
3.2
The send to buttons
4
Browse species and genes
4.1
Structure of the Browse page
4.2
Structure of the species detail page
5
DE Gene analysis
5.1
Overview the structure of module page
5.2
First step: choose options for each required parameter
5.3
Second step: check sample correlation profile and filter outlier samples
5.3.1
Automatical or manual detection of outlier samples
5.3.2
Interactive heatmap showing sample correlation profiles
5.4
Third step: Set compare groups
5.5
Forth step: Set filtering thresholds for DE genes screening
5.6
Fifth step: an overview of samples information and analysis parameter information
5.7
Sixth step: DE Gene analysis results report
5.8
Export to PDF
6
Gene expression profile
6.1
Overview the structure of module page
6.2
Choose options for each required parameters step by step
6.3
The demo button
6.4
The precise search and fuzy search mode
7
Gene fishing
7.1
Choose options for each required parameters step by step
7.2
Network toolkit
8
GO/KEGG enrichment analysis
8.1
Principles of over-representation enrichment analysis
8.2
Choose options for each required parameters step by step
9
GSEA enrichment analysis
9.1
Principles of gene set enrichment analysis (GSEA)
9.2
Choose options for each required parameters step by step
9.3
References
10
Gene map viewer
10.1
Choose options for each required parameters step by step
10.2
Overlay and annotation mode
11
BLAST - Basic Local Alignment Search Tool
11.1
Customizable BLAST
11.2
BLAST HTML results
11.3
BLAST Table results
11.4
Reference
12
Multiple sequence alignment
12.1
Sequences based multiple sequence alignment
12.2
Gene/Transcript IDs based multiple sequence alignment
12.3
Reference
13
Sequences fetch
14
Primer design
14.1
Primer design for genes with IDs as input
15
IGV browser
15.1
Visualizing expression profiles
16
Download
chentong_biology@163.com
IMP: Bridging the Gap for Medicinal Plant Genomics
16
Download
Genome sequences, gene annotation files and sequences could be downloaded directly.
